Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle

A Genome-wide Association Study of Non-additive Effects for Milk Yield and Fertility in Holstein and Jersey Dairy Cattle

It has been suggested that traits associated with fitness, such as fertility, may have proportionately more genetic variation arising from non-additive effects than traits with higher heritability, such as milk yield. Here, we performed a large genome scan with 408,255 single nucleotide polymorphism (SNP) markers to identify chromosomal regions associated with dominance and epistatic (pairwise ...

Genomic prediction reveals significant non- additive effects for growth in hybrid Eucalyptus

A genome-wide scan for signatures of recent selection in Holstein cattle.

The data from the newly available 50 K SNP chip was used for tagging the genome-wide footprints of positive selection in Holstein-Friesian cattle. For this purpose, we employed the recently described Extended Haplotype Homozygosity test, which detects selection by measuring the characteristics of haplotypes within a single population. To assess formally the significance of these results, we com...

Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption

Coffee is one of the most consumed beverages world-wide and one of the primary sources of caffeine intake. Given its important health and economic impact, the underlying genetics of its consumption has been widely studied. Despite these efforts, much has still to be uncovered. In particular, the use of non-additive genetic models may uncover new information about the genetic variants driving co...

Prediction of whole-genome risk for selection and management of hyperketonemia in Holstein dairy cattle.

Hyperketonemia (HYK), a common early postpartum health disorder characterized by elevated blood concentrations of β-hydroxybutyrate (BHB), affects millions of dairy cows worldwide and leads to significant economic losses and animal welfare concerns. In this study, blood concentrations of BHB were assessed for 1,453 Holstein cows using electronic handheld meters at four time points between 5 and...